Have you spoken to your service manager about this, budstang50? He is in the best position to ensure a proper diagnosis, and will be able to provide available options and/or coverage for any work needed.
Also, remember most paid repairs done at a Ford Dealer come with a 24 months/unlimited miles warranty. You can schedule an appointment online here.
I am picking up my 2012 GT this morning after having the AC compressor replaced at 44,000 miles. The clutch plate broke and the compressor was leaking. $900 total at my local shop.