Electrical Need Help With Wires

So I've been staring at schematics for some time now and can't seem to figure this mess out. Can anybody identify these wires and where they need to go?
Here's the first. These wires come of the same harness with the coil plug. I've got a cut black/green and a cut black/yellow and I'm assuming a ground connector at the end.
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Secondly, these come off the harness that routes to the headlights and such. Near the coil area also. There's a black/orange. A blue with a weird connector and a fusible link it looks like with what appears to be a yellow/black wire...
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There's a lone wire (grn/blk) coming off of that EEC ground and I don't know where it goes. Somebody cut it.
Can someone show me how these wires are originally ran? I finally got the car running but now I'm only showing 12.5 at the battery now, before it charged just fine.
 
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Fuse links come with a current rating just like fuses. A clue as to what current they are designed for is to look at the size wire they protect.



Grounds

Revised 28-Oct-2012 to add signal ground description & possible problems if it is bad

Grounds are important to any electrical system, and especially to computer controlled engines. In an automobile, the ground is the return path for power to get back to the alternator and battery.

Make sure that all the ground places are clean and shiny bare metal: no paint, no corrosion.

1.) The main power ground is from engine block to battery: it is the power ground for the starter & alternator.


2.) The secondary power ground is between the back of the intake manifold and the driver's side firewall. It is often missing or loose. It supplies ground for the alternator, A/C compressor clutch and other electrical accessories such as the gauges. The clue to a bad ground here is that the temp gauge goes up as you add electrical load such as heater, lights and A/C.

Any car that has a 3G or high output current alternator needs a 4 gauge ground wire running from the block to the chassis ground where the battery pigtail ground connects. The 3G has a 130 amp capacity, so you wire the power side with 4 gauge wire. It stands to reason that the ground side handles just as much current, so it needs to be 4 gauge too.

The picture shows the common ground point for the battery , computer, & extra 3G alternator ground wire as described above in paragraph 2. A screwdriver points to the bolt that is the common ground point.

The battery common ground is a 10 gauge pigtail with the computer ground attached to it.
Picture courtesy timewarped1972
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Correct negative battery ground cable.
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3.) The computer's main power ground (the one that comes from the battery ground wire) uses pins 40 & 60 for all the things it controls internally: it comes off the ground pigtail on the battery ground wire. Due to its proximity to the battery, it may become corroded by acid fumes from the battery.
In 86-90 model cars, it is a black cylinder about 2 1/2" long by 1" diameter with a black/lt green wire.
In 91-95 model cars it is a black cylinder about 2 1/2" long by 1" diameter with a black/white wire.
You'll find it up next to the starter solenoid where the wire goes into the wiring harness.

All the grounds listed in items 1,2 & 3 need to bolt to clean, shiny bare metal. A wire brush or some fine sandpaper is the best thing to use to clean the ground connections.


4.) All the sensors have a common separate signal ground. This includes the TPS, ACT, EGR, BAP, & VSS sensors. This ground is inside the computer and connects pin 46 to pins 40 & 60, which are the main computer grounds. If this internal computer ground gets damaged, you won't be able to dump codes and the car will have idle/stall/ performance problems

5.) The O2 sensor heaters have their own ground (HEGO ground) coming from the computer. This is different and separate from the O2 sensor ground. It is an orange wire with a ring terminal on it. It is located in the fuel injector wiring harness and comes out under the throttle body. It gets connected to a manifold or bolt on back of the cylinder head.

6.) The TFI module has 2 grounds: one for the foil shield around the wires and another for the module itself. The TFI module ground terminates inside the computer.

7.) The computer takes the shield ground for the TFI module and runs it from pin 20 to the chassis near the computer.


See http://assets.fluke.com/appnotes/automotive/beatbook.pdf for help for help troubleshooting voltage drops across connections and components. Be sure to have the maximum load on a circuit when testing voltage drops across connections. As current across a defective or weak connection, increases so does the voltage drop. A circuit or connection may check out good with no load or minimal load, but show up bad under maximum load conditions. .

Voltage drops should not exceed the following:
200 mV Wire or cable
300 mV Switch
100 mV Ground
0 mV to <50 mV Sensor Connections
0.0V bolt together connections

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Extra grounds are like the reserve parachute for a sky diver. If the main one fails, there is always your reserve.

The best plan is to have all the grounds meet at one central spot and connect together there. That eliminates any voltage drops from grounds connected at different places. A voltage drop between the computer ground and the alternator power ground will effectively reduce the voltage available to the computer by the amount of the drop.



Alternator troubleshooting for 86-93 5.0 Mustangs:

Never, never disconnect an alternator from the battery with the engine running. The resulting voltage spike can damage the car's electronics including the alternator.



Revised 15 April 2012 to add simple check for regulator failure in Engine off ignition on, battery fully charged section, item 2.

Red color text applies to cars with a 3G alternator.

Do all of these tests in sequence. Do not skip around. The results of each test depend on the results of the previous tests for correct interpretation.

Simple first step: Remove the alternator and take it to your local auto parts store. They can bench test it for free.


Use a safety pin to pierce and probe the insulated connectors from the rear when doing tests with the connector plugged into its' mating connector.

Engine off, ignition off, battery fully charged.
1.) Look for 12 volts at the alternator output. No 12 volts and the dark green fuse link between the orange/black wires and the battery side of the starter solenoid has open circuited.
3G alternator: Look for 12 volts at the stud on the back of the alternator where the 4 gauge power feed wire is bolted.
No voltage and the fuse for the 4 gauge power feed wire is open or there are some loose connections.

2.) Look for 12 volts on the yellow/white wire that is the power feed to the regulator. No 12 volts, and the fuse link for the yellow/white wire has open circuited.

Engine off, ignition on, battery fully charged:
1.) Alternator warning light should glow. No glow, bulb has burned out or there is a break in the wiring between the regulator plug and the dash. The warning light supplies an exciter voltage that tells the regulator to turn on. There is a 500 ohm resistor in parallel with the warning light so that if the bulb burns out, the regulator still gets the exciter voltage.
Disconnect the D connector with the 3 wires (yellow/white, white/black and green/red) from the voltage regulator.
Measure the voltage on the Lt green/red wire. It should be 12 volts. No 12 volts and the wire is broken, or the 500 ohm resistor and dash indicator lamp are bad. If the 12 volts is missing, replace the warning lamp. If after replacing the warning lamp, the test fails again, the wiring between the warning lamp and the alternator is faulty. The warning lamp circuit is part of the instrument panel and contains some connectors that may cause problems.

2.) Reconnect the D plug to the alternator
Probe the green/red wire from the rear of the connector and use the battery negative post as a ground. You should see 2.4-2.6 volts. No voltage and the previous tests passed, you have a failed voltage regulator. This is an actual measurement taken from a car with a working electrical system. If you see full or almost full12 volts, the regulator has failed.

Engine on, Ignition on, battery fully charged:
Probe the green/red wire from the rear of the connector and use the battery negative post as a ground. You should see battery voltage minus .25 to 1.0 volt. If the battery measured across the battery is 15.25 volts, you should see 14.50 volts

Familiarize yourself with the following application note from Fluke: See http://assets.fluke.com/appnotes/automotive/beatbook.pdf for help for help troubleshooting voltage drops across connections and components. .

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You will need to do some voltage drop testing of several of the wires.

Start looking for these things:
1.) Bad diode(s) in the alternator - one or more diodes have open circuited and are causing the voltage to drop off as load increases. Remove the alternator and bench test it to confirm or deny this as being the problem.

2.) The secondary power ground is between the back of the intake manifold and the driver's side firewall. It is often missing or loose. It supplies ground for the alternator, A/C compressor clutch and other electrical accessories such as the gauges. Do the voltage drop test as shown in the Fluke tech note link. Measure the voltage drop between the alternator frame and the battery negative post. Watch for an increase in drop as the load increases. Use the Fluke voltage drop figures as guidelines for your decisions.

3.) Bad regulator that does not increase field current as load increases. Remove the alternator and bench test it to confirm or deny this as being the problem.

4.) Bad sense wire - open circuit in sense wiring or high resistance. The yellow/white wire is the voltage sense and power for the field. There is a fuse link embedded in the wiring where it connects to the black/orange wiring that can open up and cause problems. Disconnect the battery negative cable from the battery: this will keep you from making sparks when you do the next step. Then disconnect the yellow/white wire at the alternator and the green fuse link at the starter solenoid/starter relay. Measure the resistance between the alternator end of the yellow/white wire and the green fuse link: you should see less than 1 ohm. Reconnect all the wires when you have completed this step.

5.) Bad power feed wiring from the alternator. Use caution in the next step, since you will need to do it with everything powered up and the engine running. You are going to do the Fluke voltage drop tests on the power feed wiring, fuse links and associated parts. Connect one DMM lead to the battery side of the starter solenoid/starter relay. Carefully probe the backside of the black/orange wire connector where it plugs into the alternator. With the engine off, you should see very little voltage. Start the engine and increase the load on the electrical system. Watch for an increase in drop as the load increases. Use the Fluke voltage drop figures as guidelines for your decisions.


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Voltage drops should not exceed the following:
200 mV Wire or cable
300 mV Switch
100 mV Ground
0 mV to <50 mV Sensor Connections
0.0V bolt together connections

Alternator wiring circuit
Notice the green wire connects to a switched power source. The circuit contains a 500 ohm resistor in series between the switched power and the alternator. Connecting it to switched power keeps the regulator from drawing current when the engine is not running. The resistor limits the current flowing through the wire so that a fuse isn't needed if the wire shorts to ground.

Also notice the sense wire connects to the starter solenoid and it is fused. It connects to the starter solenoid so that it can "sense" the voltage drop across the output wiring from the alternator.

Replacement parts:
14 gauge fuse link for stock alternator.

Bussman BP/FL14 Fusible link
AutoZone

Dorman - Conduct-Tite 14 Gauge Fusible Link Wire Part No. 85620
Advance auto parts #85620
Pep Boys - SKU #8637594
 
I hate searching for a topic and ending up with dead threads so here's an update.

I started searching for more cut and broken wires. I started unwrapping electrical tape from suspect harnesses. While doing this I heard the HIDs click on and off....more cut wires making contact.

As it turns out, for whatever reason I kept the alternator harness off of another fox I used to have. It just so happened to have the other end to the o2 sensor plug also. I yanked the old harness out and routed the new one in.

When I cranked it and let it run the amp light was illuminated. After searching around I found that the fusible link was disintegrated at the starter relay. I bypassed the link with a jumper wire, the light went off and the volts at the battery is closer to 13.

I am pleased. Just need to replace that link and convolute all the wiring.