02 convertible top problem

Hey everyone. Im new on here and have a problem with the convertible top on my car. I just put a new top and window on the car and it came out looking really nice. The problem is when I go to put the top down it gets about 2/3 of the way down and seems to jamb. Its almost like the window wont fold down into the well. The old top it worked fine but it was the original top and falling apart. The bare frame operated like it should. It only started when I got the new top on. The pads, cables, and headliner were replaced at the same time. I'm really stumped by it. The cylinders are both clean and dry, motor works great, and its full of fluid. Any help would be greatly appreciated.
 
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