I say, tie it to the unibody structure, SOMEHOW.
to answer your Q, 352Ford2, the drag guys are pretty much all doing through-the-floor subframe connectors. I wouldn't do it myself because I don't want an ugly lump in my rear seat floor, but I got much the same effect by using my convertible subfloor as my through-the-floor bit. Result? Very little loss in ground clearance (already lost some through the convertible subfloor, so no more harm done there) and subframes that are integral to the unibody structure now. Can't hurt, right?
http://web.mac.com/jbauder/iWeb/6970clutchpedals/tinmansubframes.html
result for me: LOTS more chassis stiffness, and when you jack up one corner, the same side's other wheel comes up. Also, if I hit a speed bump at an angle, the car rocks back and forth like a seesaw. Pretty stiff for a convertible.
My decision was pretty easy, having a convertible - I just used the convertible subfloor, but yours is harder - do you really want to hack up the main floor? But I do think there is a huge advantage to making the roll cage/subframe connectors/whatever "endoskeleton" you are giving the car integral to the unibody if it is not too much work.
Torque boxes are just sheet metal boxes, after all, but they more or less work - a sheet metal box or sheet metal between two i-beams, for example, would be pretty stiff.
As far as the chassis stiffening kit, do your own experiment with plywood and 2x4s. make a square of plywood - how stiff is it in twisting? Now nail 2x4s around the perimeter and make another square of plywood and nail that in on the other side. (or glue, as is more appropriate to what a weld would be like) You have a pretty damn stiff box. That is what the TCP kit tries to do, or at least what sheet metal would do when welded to the rockers on one side and a subframe on the other. Remember to put a metal member at the front and back of the "box" too.