I've got a '99 GT. I figure I dont want a supercharger, as my car's got some good miles on it and I'm afraid it might detonate... plus I'd be starting with 0 miles on a crate. And I can get a Turnkey 347 stroker smallblock for around $3600, question is would the install utterly kill me and want me to throw my car into the river? I'd think it'd be worth the money definitely (theyre talking 410-430 HP, 450 lb-ft torque) but I'd have to fab some custom mounts, possibly a tranny adapter plate (will definitely have to upgrade the tranny anyways) and do quite a bit of other work including the whole exhaust problem
But I'm up for a challenge. Anyone done a swap into a newer Stang before? Looking for lurking problems or if I'm just an idiot all around 
Thanks in advance
But I'm up for a challenge. Anyone done a swap into a newer Stang before? Looking for lurking problems or if I'm just an idiot all around 
Thanks in advance

You will spend faaaar too much money on that venture for the amount of power you'll get out of it. The way to go is either blower or bottle on a built bottom end... Thats just you're only option for real power. There just isn't an aftermarket for these 4.6's like there was for the beloved 302 