Smog hoses aren't part of the vac setup. You'd just vent outside air.
The ports in the back of the heads are so that the smog pump can pump O2 to the exhaust ports to flow out into the headers and down to the pre-cats to help convert gases. Once the car warms up, the valve switches flow to pump the air down to the main cats and shuts off flow to the thermactor ports.
If the cats are gone, you can delete all that stuff and plug the holes. If you install GT40p's which do not have the ports, but still run cats, you can just remove the bypass valve and run the smog like directly down to the main cats just leaving the front valve in place (the one near the pump)