The codes 44 and 67 won't cause the misfire condition you are having problems with, but the code 96 could be the cause.
Codes 44 & 94 - AIR system inoperative - Air Injection. Check vacuum lines for leaks, & cracks. Check for a clogged air crossover tube, where one or both sides of the tube clog with carbon.
Revised 21 Sep 2012 to correct the description of the process that sets the code and include Thermactor Air System diagram.
If you have a catalytic converter H pipe, you need to fix these codes. If you don't, then don't worry about them.
Code 44 passenger side air not functioning.
Code 94 driver side air not functioning.
The TAD solenoid/TAD diverter valve directs smog pump output to either the crossover tube attached to the cylinder heads or to the catalytic converters.
The O2 sensors are placed before the catalytic converters, so they do not see the extra O2 when the smog pump's output is directed to the converters or the input just before the converter.
The 44/94 code uses the O2 sensors to detect a shift in the O2 level in the exhaust. The smog pump provides extra air to the exhaust which raises the O2 level in the exhaust when the smog pump output is directed through the crossover tube.
When there is an absence of increase in the O2 levels when the TAD solenoid/TAD diverter valve directs air through the crossover tube, it detects the lower O2 level and sets the code.
Failure mode is usually due to a clogged air crossover tube, where one or both sides of the tube clog with carbon. The air crossover tube mounts on the back of the cylinder heads and supplies air to each of the Thermactor air passages cast into the cylinder heads. When the heads do not get the proper air delivery, they set codes 44 & 94, depending on which passage is clogged. It is possible to get both 44 & 94, which would suggest that the air pump or control valves are not working correctly, or the crossover tube is full of carbon or missing.
Testing the system:
Note that the engine must be running to do the tests unless stated otherwise. For safety’s sake, do test preparation like loosening clamps, disconnecting hoses and connecting things to a vacuum source with the engine off.
Disconnect the big hose from smog pump: with the engine running you should feel air output. Reconnect the smog pump hose & apply vacuum to the first vacuum controlled valve: Its purpose is to either dump the pump's output to the atmosphere or pass it to the next valve.
The next vacuum controlled valve directs the air to either the cylinder heads when the engine is cold or to the catalytic converter when the engine is warm. Disconnect the big hoses from the back side of the vacuum controlled valve and start the engine. Apply vacuum to the valve and see if the airflow changes from one hose to the next.
The two electrical controlled vacuum valves mounted on the rear of the passenger side wheel well turn the vacuum on & off under computer control. Check to see that both valves have +12 volts on the red wire. Then ground the white/red wire and the first solenoid should open and pass vacuum. Do the same thing to the light green/black wire on the second solenoid and it should open and pass vacuum.
Remember that the computer does not source power for any actuator or relay, but provides the ground necessary to complete the circuit. That means one side of the circuit will always be hot, and the other side will go to ground or below 1 volt as the computer switches on that circuit.
The following computer tests are done with the engine not running.
The computer provides the ground to complete the circuit to power the solenoid valve that turns the
vacuum on or off. The computer is located under the passenger side kick panel. Remove the kick panel & the cover over the computer wiring connector pins. Check Pin 38 Solenoid valve #1 that provides vacuum to the first Thermactor control valve for a switch from 12-14 volts to 1 volt or less. Do the same with pin 32 solenoid valve #2 that provides vacuum to the second Thermactor control valve. Turning the ignition to Run with the computer jumpered to self-test mode will cause all the actuators to toggle on and off. If after doing this and you see no switching of the voltage on and off, you can start testing the wiring for shorts to ground and broken wiring. An Ohm check to ground with the computer connector disconnected & the solenoid valves disconnected should show open circuit between the pin 32 and ground and again on pin 38 and ground. In like manner, there should be less than 1 ohm between pin 32 and solenoid valve #2 and pin 38 & Solenoid valve #1.
The following computer tests are done with the engine running.
If after checking the resistance of the wiring & you are sure that there are no wiring faults, start looking at the solenoid valves. If you disconnect them, you can jumper power & ground to them to verify operation with the engine running. Power & ground supplied should turn on the vacuum flow, remove either one and the vacuum should stop flowing.
Typical resistance of the solenoid valves is in the range of 20-70 Ohms.
See the following website for some help from Tmoss (diagram designer) & Stang&2Birds (website host)
http://www.veryuseful.com/mustang/tech/engine/images/fuel-alt-links-ign-ac.gif
http://www.veryuseful.com/mustang/tech/engine/images/88-91eecPinout.gif
If you have a catalytic converter H pipe, you need to fix these codes. If you don't, then don't worry about them
Code 67
Revised 18-Mar-2017 to include warning about the necessity of having a 5 speed O2 Sensor wiring harness when bypassing the wiring for test purposes
Cause of problem:
Clutch not depressed (5 speed) or car not in neutral (5 speed and auto) or not in park (auto) or A/C in On position when codes where dumped. Possible neutral safety switch or wiring problem. This code will prevent you from running the Key On Engine On tests.
External evidence from other sources claims that a code 67 can cause an idle surge condition. Do try to find and fix any issues with the switch and wiring if you get a code 67.
What the NSS (Neutral Safety Switch) does:
5 speed transmission: It has no connection with the starter, and the engine can be cranked without it being connected.
Auto transmission: It is the safety interlock that prevents the starter from cranking the engine with the transmission in gear.
What it does for both 5 speed and auto transmission cars:
The computer wants to make sure the A/C is off due to the added load on the engine for the engine running computer diagnostic tests. It also checks to see that the transmission is in Neutral (5 speed and auto transmission) and the clutch depressed (T5, T56, Tremec 3550 & TKO)). This prevents the diagnostics from being run when the car is driven. Key On Engine Running test mode takes the throttle control away from the driver for several tests.
This could prove hazardous if the computer was jumpered into test mode and then driven.
The following is for 5 speed cars only. Do not do this unless you are sure that you have a 5 speed O2 Sensor harness!!!! Smoke, sparks and expensive pain in the wallet may ensue if you don’t.
The NSS code 67 can be bypassed for testing. You will need to temporarily ground computer pin 30 to the chassis. Computer pin 30 uses a Lt blue/yellow wire. Remove the passenger side kick panel and then remove the plastic cover from the computer wiring connector. Use a safety pin to probe the connector from the rear. Jumper the safety pin to the ground near the computer.
Be sure to remove the jumper BEFORE attempting to drive the car!!!
Code 96 for 86-90 model 5.0 Mustang – KOEO- Fuel pump monitor circuit shows no power - Fuel pump relay or battery power feed was open - Power / Fuel Pump Circuits. The fuel pump lost power at some time while the ignition switch was in the run position. The main power feed to the pump is what is losing power.
Look for a failing fuel pump relay, bad connections or broken wiring. The fuel pump relay is located under the passenger seat.
On Mass Air Conversions, the signal lead that tells the computer that the fuel pump has power may not have been wired correctly.
See
http://www.stangnet.com/tech/maf/massairconversion.html
Look for power at the fuel pump - the fuel pump has a connector at the rear of the car with a pink/black wire and a black wire that goes to the fuel pump. The pink/black wire should be hot when the test connector is jumpered to the test position. . To trick the fuel pump into running, find the ECC test connector and jump the connector in the lower RH corner to ground.
86-90 Models:
Using the diagram, check the red/black wire from the fuel pump relay: you should see 12 volts or so. If not, check the inertia switch: on a hatch it is on the drivers side by the taillight. Look for a black rubber plug that pops out: if you don't find it, then loosen up the plastic trim. Check for voltage on both sides of the switch. If there is voltage on both sides, then check the Pink/black wire on the fuel pump relay: it is the power feed to the fuel pump. Good voltage there, then the fuel pump body to tank wiring harness connector is the likely culprit since it is getting power. No voltage there, check the Orange/Lt blue wire, it is the power feed to the fuel pump relay & has a fuse link in it. Good voltage there & at the Pink/black wire, swap the relay.
Keep in mind that the relay wiring and socket can also cause intermittent problems. Clean the relay socket with non-flammable brake parts cleaner or electrical contact cleaner. If you find damaged wiring at the relay socket, replacement pigtail socket assemblies are available at the auto parts stores. Be sure to solder the wires and cover the solder joints with heat shrink tubing if you replace the relay socket.