Charging

I had a charging issue as well and it came down to my cluster being damaged. The wire connecting to the where the battery light was, was damaged. Not sure if that would be related to your issue but just figured I'd throw it out there.

Do you check the alternator for output removed off of the car?

Check your wiring. Make sure the energizer wire is getting voltage with the key on.

General karthief gave you the diagrams you need.

P.12a & 13

View: https://drive.google.com/open?id=1on5czXKmpETzxUggWTGtoUuVkJT2UUxN

Alternator troubleshooting for 86-93 5.0 Mustangs:

Never, never disconnect an alternator from the battery with the engine running. The resulting voltage spike can damage the car's electronics including the alternator.


Revised 28-Nov-2018 to add warning that the instrument cluster must be in place and working for the alternator to charge

Red color text applies to cars with a 3G alternator.

Do all of these tests in sequence. Do not skip around. The results of each test depend on the results of the previous tests for correct interpretation.

Simple first step: Remove the alternator and take it to your local auto parts store. They can bench test it for free.

Use a safety pin to pierce and probe the insulated connectors from the rear when doing tests with the connector plugged into its' mating connector.

Engine off, ignition off, battery fully charged.
1.) Look for 12 volts at the alternator output. No 12 volts and the dark green fuse link between the orange/black wires and the battery side of the starter solenoid has open circuited.
3G alternator: Look for 12 volts at the stud on the back of the alternator where the 4 gauge power feed wire is bolted.
No voltage and the fuse for the 4 gauge power feed wire is open or there are some loose connections.
2.) Look for 12 volts on the yellow/white wire that is the power feed to the regulator. No 12 volts, and the fuse link for the yellow/white wire has open circuited.

Engine off, ignition on, battery fully charged:
1.) The alternator MUST have the instrument cluster in place and working properly. The alternator warning light is a part of the charging circuit. The alternator warning light should glow. No glow, bulb has burned out or there is a break or bad connection in the wiring between the regulator plug and the instrument cluster. The warning light supplies an exciter voltage that tells the regulator to turn on. There is a 500 ohm resistor in parallel with the warning light so that if the bulb burns out, the regulator still gets the exciter voltage.
Disconnect the D connector with the 3 wires (yellow/white, white/black and green/red) from the voltage regulator.
Measure the voltage on the Lt green/red wire. It should be 12 volts. No 12 volts and the wire is broken, or the 500 ohm resistor and dash indicator lamp are bad. If the 12 volts is missing, replace the warning lamp. If after replacing the warning lamp, the test fails again, the wiring between the warning lamp and the alternator is faulty. The warning lamp circuit is part of the instrument panel and contains some connectors that may cause problems.

2.) Reconnect the D plug to the alternator
Probe the green/red wire from the rear of the connector and use the battery negative post as a ground. You should see 2.4-2.6 volts. No voltage and the previous tests passed, you have a failed voltage regulator. This is an actual measurement taken from a car with a working electrical system. If you see full or almost full12 volts, the regulator has failed.

Engine on, Ignition on, battery fully charged:
Probe the green/red wire from the rear of the connector and use the battery negative post as a ground. You should see battery voltage minus .25 to 1.0 volt. If the battery measured across the battery is 15.25 volts, you should see 14.50 volts

Familiarize yourself with the following application note from Fluke: See http://assets.fluke.com/appnotes/automotive/beatbook.pdf for help for help troubleshooting voltage drops across connections and components. .



You will need to do some voltage drop testing of several of the wires.

Start looking for these things:
1.) Bad diode(s) in the alternator - one or more diodes have open circuited and are causing the voltage to drop off as load increases. Remove the alternator and bench test it to confirm or deny this as being the problem.

2.) The secondary power ground is between the back of the intake manifold and the driver's side firewall. It is often missing or loose. It supplies ground for the alternator, A/C compressor clutch and other electrical accessories such as the gauges. Do the voltage drop test as shown in the Fluke tech note link. Measure the voltage drop between the alternator frame and the battery negative post. Watch for an increase in drop as the load increases. Use the Fluke voltage drop figures as guidelines for your decisions.

3.) Bad regulator that does not increase field current as load increases. Remove the alternator and bench test it to confirm or deny this as being the problem.

4.) Bad sense wire - open circuit in sense wiring or high resistance. The yellow/white wire is the voltage sense and power for the field. There is a fuse link embedded in the wiring where it connects to the black/orange wiring that can open up and cause problems. Disconnect the battery negative cable from the battery: this will keep you from making sparks when you do the next step. Then disconnect the yellow/white wire at the alternator and the green fuse link at the starter solenoid/starter relay. Measure the resistance between the alternator end of the yellow/white wire and the green fuse link: you should see less than 1 ohm. Reconnect all the wires when you have completed this step.

5.) Bad power feed wiring from the alternator. Use caution in the next step, since you will need to do it with everything powered up and the engine running. You are going to do the Fluke voltage drop tests on the power feed wiring, fuse links and associated parts. Connect one DMM lead to the battery side of the starter solenoid/starter relay. Carefully probe the backside of the black/orange wire connector where it plugs into the alternator. With the engine off, you should see very little voltage. Start the engine and increase the load on the electrical system. Watch for an increase in drop as the load increases. Use the Fluke voltage drop figures as guidelines for your decisions.


Alternator wiring diagram for 87-93 Mustangs.



The following are diagrams courtesy of Tmoss & Stang&2birds

Alternator wiring diagram for 94-95 Mustangs.


Voltage drops should not exceed the following:
200 mV Wire or cable
300 mV Switch
100 mV Ground
0 mV to <50 mV Sensor Connections
0.0V bolt together connections

Alternator wiring circuit
Notice the green wire connects to a switched power source. The circuit contains a 500 ohm resistor in series between the switched power and the alternator. Connecting it to switched power keeps the regulator from drawing current when the engine is not running. The resistor limits the current flowing through the wire so that a fuse isn't needed if the wire shorts to ground.

Also notice the sense wire connects to the starter solenoid and it is fused. It connects to the starter solenoid so that it can "sense" the voltage drop across the output wiring from the alternator.


Fuse link for 86-93 Mustangs
Replacement parts:
14 gauge fuse link for stock alternator.

Bussman BP/FL14 Fusible link
AutoZone

Dorman - Conduct-Tite 14 Gauge Fusible Link Wire Part No. 85620
Advance auto parts #85620
Pep Boys - SKU #8637594

Complete 3G with diagrams instructions

If you have a 3G alternator, the white/ yellow wire is critical to proper operation. It is the voltage sense and regulator power lead that picks up the difference in voltage at the alternator output stud and the connection point at the starter solenoid. If you cheat and run it directly to the alternator output, it sees the voltage at the alternator output stud. It does not see the voltage at the starter solenoid connection point where it feeds power to everything else. You may have a voltage drop in the wiring between the alternator output stud and the connection to the starter solenoid. Thus you may have low voltage or less than the standard regulated voltage at the starter solenoid connection point. This makes for low voltage throughout the rest of the car: everything operates at less than full efficiency.

[See the following website for some help from Tmoss (diagram designer) & Stang&2Birds (website host) for help on 88-95 wiring; http://www.veryuseful.com/mustang/tech/engine/ Everyone should bookmark this site.

94-95 Mustang wiring diagrams
http://www.veryuseful.com/mustang/tech/engine/#95-95Diagrams

Complete computer, actuator & sensor wiring diagram for 91-93 Mass Air Mustangs
http://www.veryuseful.com/mustang/tech/engine/images/91-93_5.0_EEC_Wiring_Diagram.gif

Complete computer, actuator & sensor wiring diagram for 88-91 Mass Air Mustangs
http://www.veryuseful.com/mustang/tech/engine/images/88-91_5.0_EEC_Wiring_Diagram.gif

Ignition switch wiring
http://www.veryuseful.com/mustang/tech/engine/images/IgnitionSwitchWiring.gif

Fuel, alternator, A/C and ignition wiring
http://www.veryuseful.com/mustang/tech/engine/images/fuel-alt-links-ign-ac.gif

O2 sensor wiring harness
http://www.veryuseful.com/mustang/tech/engine/images/mustangO2Harness.gif

Vacuum diagram 89-93 Mustangs
http://www.veryuseful.com/mustang/tech/engine/images/mustangFoxFordVacuumDiagram.jpg

HVAC vacuum diagram
http://www.veryuseful.com/mustang/tech/engine/images/Mustang_AC_heat_vacuum_controls.gif

TFI module differences & pin out
http://www.veryuseful.com/mustang/tech/engine/images/TFI_5.0_comparison.gif

Fuse box layout
http://www.veryuseful.com/mustang/tech/engine/images/MustangFuseBox.gif

Mustang 5.0 Lights and Radio schematic, by TMoss:
http://www.veryuseful.com/mustang/tech/engine/images/mustangFoxLights-Radio_diag.gif

87-92 power window wiring
http://www.veryuseful.com/mustang/tech/engine/images/mustang87-92 PowerWindowWiring.gif

93 power window wiring
http://www.veryuseful.com/mustang/tech/engine/images/mustang93PowerWindows.gif

T5 Cutaway showing T5 internal parts
http://www.veryuseful.com/mustang/tech/engine/images/5_Speed_Cutaway_Illustrated.jpg

Visual comparison of the Ford Fuel Injectors, picture by TMoss:
http://www.veryuseful.com/mustang/tech/engine/images/Ford_Injector_Guide.jpg

Convertible top motor wiring http://www.veryuseful.com/mustang/tech/engine/images/mustang88VertTopMotorCkt.gif

Engine mounted fuel injector harness
http://www.veryuseful.com/mustang/tech/engine/images/mustangEngineHarness.gif

Location of the TPS, IAB, and the 10-pin connectors on a 5.0, picture by TMoss:
http://www.veryuseful.com/mustang/tech/engine/images/TPS_IAB_Pic.jpg

Starter circuit
https://www.stangnet.com/mustang-forums/attachments\21328

Alternator diagram for 94-95 Mustangs.
http://www.veryuseful.com/mustang/tech/engine/images/Mustang-94-95-Alt.gif