You should be.
Reason I say should is because the SN95 GT front calipers do require more fluid. They are 66mm vs stock 60mm. SO swapping the calipers on will give you a slightly softer pedal. So i'd leave the stock booster in that situation to keep assist low. You may find it perfect.
BUT, if you get your hands on a set of 99-04 GT./V6 calipers, the pedal feel will be closer to stock since they have less hydraulic surface area than the 66mm 94-98 calipers. So the feel may be just like stock.
As a comparison, these are the piston surface areas for 2 calipers total
Stock 87-93 = 5654mm^2
94-98 GT/V6 = 6842mm^2
99-04 GT/V6 = 6220mm^2
The way it works, if you keep the MC the same (master cylinder), then the work effort goes up if you decrease caliper piston size (slave cylinder) and becomes easier if you increase slave cylinder size. The booster....well...boosts. So running a slightly smaller size MC with the stock booster *might* even out
FYI, if you swap to rear disks down the road...all this changes.