Well I would talk to Maximum Motorsports. Good bunch of guys over there in my experiences. I can give you a heads up, if you ask them they will say to replace the LCA and leave the uppers stock. They say this because the poorly design mustang rear suspension is prone to binding. Thus if you replace the uppers and lowers the problem magnifies. Their theory is that the stock uppers will give more than the aftermarket ones causing less bind.
Now MM can explain it better as they are the experts but I am just trying (like crap) to restate what they are saying. I may have mistated something but that is the general concept. They make a torque arm (I believe it is called) the will replace the need for the uppers entirely and is the best way to go about it.
I'm telling you, just call them or go to their website, they know their stuff.