I'm running FRPP shorties, Pypes Xpipe, Borla catback. With the addition of the FRPP's I picked up 20rwhp v the stock manifolds that seems to be the exception rather than the rule on shorties though.
If your going to go LT's I'd suggest some that will clear for tranny removal, Flowtech's / hookers do, so do kook's but they kinda $$ IMO.