Might be a dumb question but its uncharted territory for me...
How did you drop the motor in? Bolts through a chain in the header holes? Or did u disassemble it a little from that last picture you had with it on the stand?
wiring setbacks is the latest, I am getting feedback issues with the fan and A/C wiring on the Fast box I think, plus going out of town this weekend will push me back another week. I'll be sure and update when I make some more progress. Good news is the hood shuts with 1/2" k-member spacers and some cutting of the underside!
I has Second Street Speed in NY make a box that plugs into where the stock computer goes and then it ties into my Accel Gen 7 DFI. It works great! so things like the fan etc were all kept factory on the wiring since the stock computer turned then on/off.