If your EFI,you need to tune it for use with open exhaust.
In other words cause a set program will only hold an injector open for a certian period,when you take off your mufflers to reduce backpressure it can over scaveng and pull some fuel out of the port,causing a slight lean condition.
vristang,the exhaust "pulse" from one primare will pull the "pulse" charge of another port/primary also,once it reaches the collector.The collector becomes useless above peak torque though,as the velocitys are high enough to pull the a/f through its own primary.
You got to tune for open exhuast/headers....so dont just say that mufflers make more power.