The full long tube system is probably going to be worth 25+ maybe more given the improvements over the stock "logs". The long merge collector is really going to open it up on the top end. As more ECU tuning and aftermarket upgrades come available there will be even more to gain. With the blowers from Vortech and Whipple who knows....35+ is pretty common with a good complete exhaust with headers.
There isn't going to be much improvement in going to larger exhaust systems. The stock 2.5" system is really straight and there are only two small cats. 3" is going to be too big for the 4.6 Swapping out the axle back set up to a higher flowing and better sounding set up will add some ponies and make it more fun to drive. That's killer because the axle back systems are going to be like $300 and by the looks of it we should be able to install them in the driveway.