there are red and green vacuum lines that run to that elbow. if my memory serves me correctly, one of them goes to the egr valve itself, and the other goes to the vacuum tree on the manifold. do you still have your egr in place? if not, you can cap both of those vacuum lines without a problem. (be sure to cap both sides)
There is a red wire and green wire. Those are no problem.
The hose that is larger then the fuel pressure regulator vacuum hose, and has a clamp on it, is not on it, and i need to trace it back to where its plugged into since i forgot to hook it back on before bolting my trickflow intake back on
it sounds like you are talking about the hose that comes from the brake booster. if that is it, it goes to the 3 port vacuum tree on the back of the elbow. (please excuse me if im wrong though, i moved a lot of lines to different locations on the manifold when i removed my egr and its all difficult to remember after a year).