The deal with the Mcleod's is that as long as your cranked centerline isn't f'ed up somehow then what they've already done to index it will work. Vibration could come from the bell being a bit off, pilot bearing alignment, bad driveline angles, driveshaft problem etc. Are you using the stock driveshaft or is it an aftermarket aluminum one? If it's the same one you took out, did you mark it berfore you removed it? if not, try unbolting it from the rear and turning it 180 degrees and see what you get.