OK, i'm gonna tell you what it can be..to my knowledge, and i strongly believe you'll find your answer in one of these. this is ALL that it can be..if you think i know what i'm talking about use this as a guidline.
*You are suppose to have a constant 12V to that wire you tested..so you are good in that department.
* Voltage well not cause your C.O.P to catch fire, AMPerage CAN and WILL.
*The first thing is the coil.. typical coil has about 0.5 Ohms of resistance..any less then that you start running into trouble..in some weird way, it could be possible your old coil failed, AND that the new one was also defective in the same manner.. If this is the case, you need to Sue the living CRAP out of Ford or whoever in mexico manufactures those coils.
*Secondly, This is the TEST YOU MUST DO.. you MUST check for amperage.
You need to put your meter in series with that cylinder. (Make sure you have the exact Appropriate fuse in your meter for the amp scale, or you'll be out how ever much you paid for that meter)
I'll tell you right now, if that fuse blows you found your problem.. IIRC most meter fuses are like what, 10 amps? anything close to 10 amps, you found your problem.
*Thirdly, if you find excessive amperage (i'm willing to bet you will..for your sake) you are shorting out somewhere. Something, some where is shorting.. what your going to do is bust out the wiring diagram, and your going to trace the 2 wires from the harness that goes to the coil.. your going to cut all the electrical tape, etc. etc. and trace those two POS wires every which way they decide to frikin go.. and find out where they are shorting and look for any opens or something.
* 4th...this is my second car, I haven't been around a LOT of Fords, although they are my preference..my parents drive imports and stuff. But, to my knowledge, there is no module for Fords COP design.. if their were, the only place i imagine it could of been was on top of the coils themselves, sitting there waiting for a signal from the ECM..
To my knowledge, the trigger module for the coil is integral with the on board computer.. if it's malfunctioning then yes, it CAN do what you say, and yes, it CAN be limited to only one cylinder...in which case, if you haven't ever played around with a tuner and stuff.. i'd still sue the living crap out of Ford..because this is america and we can
