Nick, im gonna put money right now on the driveshaft U joints... mine did the same thing.. clunk when you slip the clutch to take off, sometimes clunk when i shift, and accellin and deaccellin.. i got that fixed and it was fine.. They are beginning to go again tho soo i think im gonna invest in a aluminum driveshaft... They wont vibrate if their bad, at kleast mine didnt.. just got a persistant clunk feel/noise.. you got alot of miles on that car, soo im sureee you can go for a new set of ujoints or an alumin DS from downs ford... U joints are 20 bucks, and it costed me 20 bucks to put em in... Im just gonna do it right and get an alum DS this time soon..