The Aluminum housing & electronics module or the complete meter is the same no matter if Ford put it on a GT or Cobra. Its the curve in the pcm of each car thats a bit different as you have pointed out here.
Ford could do that since neither motor required more air than the meter could accurately report to the pcm.
The most obvious difference is the size of inj's and Ford just made that made known in the Cobra pcm.
Different heads and intake made some adjustments in the transfer curve necessary.
After you add up all the differences, the curve will need a bit of tweecing and you see it as Ford did it in the difference between the two curves.
There is nothing sacred or taboo as far as adjusting the maf curve if it is needed. Here are a few examples where a slight adjustment might be needed.
1) Say you put a small cam
or
2) headers/mid-pipe/catback in a cobra
You most likely could use a bit of transfer curve tweecing at or around idle for optimum drivability.
3) Say you get a wb and make your first wot, max rpm baseline test run.
You are gonna find the high end fat as that is how Ford set it up.
A bit of maf curve tweecing may be needed to take care of that.
Now then, does any of the above give you ideas that allows you to answer your own Q
btw ... mafs/inj's were one of the hardest things for me to get my head around and I had to work at it a good bit until I started to see the light.
Grady