Trickflow intakes are expensive but if you are going to supercharge, I think they are a good option. I think these intakes will work well in the interim, while your engine is till mostly stock or not yet supercharged.
The Edelbrock intakes are freaking awesome but I don't think they play well with mostly stock engines. Might need to have a built engine (cams and heads) or a blower already on for those to work well.
For stock replacement, Ford OEM or Ford Racing intakes are the only way to go. Dorman intakes hurt performance and I've always been suspicious of the metal Typhoon intakes.
My stock Ford Racing intake became a bottle neck on my old Procharged GT. Once I started making 12 psi of boost, the car would make about 400 rwhp but the power would flatline there. The dyno graph literally flattened out past a certain RPM, can't remember which RPM. Maybe it was my particular car but I had a full exhaust so the issue was most likely on the intake side.