If you're not hearing any gear whine, then try marking where your pinion flange bolts to the driveshaft for reference, then unbolt it and rotate it one hole over, bolt it back together, and try it. You might have to try it a couple times, but if you're sure it's not in the wheels, brakes, etc. then try this. If you go through all of the driveshaft positions and the vibration is still there, then it could be an out of balance flywheel or harmonic dampener.