Easy. I jacked up the motor about an inch, unhooked the steering shaft (one bolt) and pulled the starter (two bolts), then the long tubes dropped right in. Access to the starter is a little tight with LT's, but not too bad.
Probably. Between my cam and the LT's, mine ran too rich to get through emissions without cheating. The two issues with LT's and tuning is 1) the O2's will cool off at idle being so far from the heads (>600* is where they need to be for accuracy) and 2) the EEC does tuning based on the assumption that the O2's are a certain distance from the heads. It'll still make closed loop adjustments with LT's, but it would be better to tell the EEC that the O2's are farther away. If you have underdrive pulleys, you might consider switching back to stock crank & alternator pulley with LT's, so that the O2's always get as much juice as possible, especially when it's cold outside (<50).
I had Ed's Muffler shorten my Magnaflow H-pipe so I could bolt it up to the LT's. With an O/R pipe it is easy.
No. You might be able to get Fox LT's to fit, the biggest difference between a Fox & 94/95 header is the EGR bung on the passenger side. 'Course, that means deleting the EGR or switching to a Fox-style TB.
Dave