Do you already own the 2000 GT? The reason I ask is a 2000 GT uses a Windsor block. Where as the 1996 is Romeo. IMO this is a better swap if done with another Romeo block. But the swap can be done using a Windsor block but there are more parts to swap or details to work through.
This swap will also have to deal with converting the 8 bolt flex plate to an 8 bolt flywheel.
For a DIY'er the only way this swap works is to make the donor motor "look" like the original motor electrically. Which means the new motor needs to re-use the original:
- Motor wiring harness
- coil pack ignition system
- original return based fuel system. Which means yes. You do need to swap the fuel rails.