The paint can be found at Wal-Mart or Autozone
Let the machine shop push the pins out inspect everything then assemble the rods, get new ARP bolts while you are at very cheap and worth it while it is apart, you'll break the stock rod before you snap the ARP bolt.
Are you going to have the assemble balanced since they are flycutting the pistons? Based on how much the machine wants for the fly cutting you could get a set of Probe SRS series pistons that will have the proper design for your motor. I thought when I checked on flycutting a few years back is was going to be around $225. New good pistons can be had for under $400...