First the taller CH put the pistons out of the bore way to far, so they will not work at all. Depending on what brand piston they are you could mill them but it may take too much meat off the crown.
Second, you should buy the piston with the correct pin size for your rod, or change rods....
What are your exactly are you trying to do? There are many off the shelf parts that will work with the stock crank.