There are many factors that affect bolt strength such as SAE grade, material composition, size and number of threads per inch. Even if the threading is cut or rolled can affect the overall strength. As said, minor cracks are the worst for fatigue applications since they create stress concentrations. There are charts that display what kind of stress concentration factor to use depending on the finish of a sample. A highly polished sample will have fewer imperfections than an extruded sample and in turn will have lower stress concentrations. However, probably one of the biggest factors in bolt strength comes from preloading, or torquing of the bolt. The more you torque the bolt, the stronger it will be (until you reach a certain point however). In short, plating can affect what the bolt can take or not, but it is not as big as some other factors. I haven't gotten too much into coatings though so this is what I have learned from standard fasteners. Basically, the smoother the surface (more polished I should say), the stronger it will be.