question about baer brake kits

Simple answer: Yes, this will solve your problem. The 94+ spindles used all of the 5 lug wheels, like Bullitt, Cobra R, the wheels you mentioned etc. The spindles were specifically designed for cars that utilize these wheels. I also use a Baer kit, and went with the modified Fox spindles, since Baer recommended them, as they are a forged part, and stronger/superior to the 94+ spindles. However, it would have been nice if they mentioned the wheel fitment problems that these spindles create, as a majority of the Ford factory wheels will not fit! A lot of guys eliminate the dust cap, or flatten it with a hammer. I run the Bullitt wheels with a plastic 'gear' style center cap, kind of reminiscent of the original Cragar or Torque Thrust wheels that Ford ripped off in the first place! lol

Unless it is a daily driver you should be able to pull the dust cap and run a 1/8" spacer to clear the center cap.