quick exhaust question

Might be kind of a dumb question, but none the less I would still like an answer to it.

Does it matter which way around you mount a muffler? I have two of the same 50 series delta flow flowmasters with the same side inlet and outlet. I noticed that in our cars the mufflers both have LH inlets and RH outlets, so therefore, can I just flip one of them over and mount in there up side down? I'd imagine that it would be ok, but I just thought I'd look for some feedback. Thanks for any help guys.
 
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Upside down is fine, not going to make a difference, but spinning them around so you make the inlet the outlet and such is a no-no, UNLESS they specifically say they are bi-directional and flow direction doesn't matter.