i ran a set of thumpers for a while on my car. they are great heads and are a definate upgrade over stock.. but the aftermarket aluminum heads take the cake.
A set of AFRs or TW heads out of the box will flow more that pretty much any ported stock castings. I imagine if you had the cash and was willing, you could make a set of stock heads flow better than the aftermarket, but you'd have more money in them when you could have got a set of aluminum heads.
Plus the weight savins are a pretty big difference. I weighed my full assemble stock castings and they were around 48-50 lbs eash, while a fully assembled TW head was around 26lbs.... your saving around 50lbs off the front of the car.
IMO spend the 1000-1500 for a nice new set of aftermarket heads and be done with it. I got my TWs and never regretted it...wish i would have done it the first time, they make good power out of box and they have even more potential when ported out some.
Didn't you buy my old Thumper's? My car never ran after that.

They are good heads no doubt, but aluminums are the way to go.