Haynes = garbage! The factory wiring diagram I linked to covers every circuit in your specific car. It shows paths, connectors, colors and even has whole car vacuum diagrams. It's what Ford techs used at the dealerships before it all went digital. The EVTM's are pretty detailed also.
1990 Mustang EVTM
Here's a step-by-step wiring conversion for an '88 LA2/3 into a '90 Mustang.
I did the conversion when I built Thunderstang.
Unfortunately, about 5 years later some clown rearended me and totalled the car.........
However, I was able to pull the motor/trans and dropped it into my '27 roadster so.........Thunderstang lives on!