Yes I'm sure they can. Until you know what the idle is set at in the tune it's going to be hard to fix the issue. In the mean time I would do the base idle reset and try to get it to idle around 650 RPMs with the IAC and SPOUT disconnected.
You guys with idle/stall problems could save a lot of time chasing your tails if you would go through the
Surging Idle Checklist. Over 50 different people contributed information to it. The
first two posts have all the fixes, and steps through the how to find and fix your idle problems without spending a lot of time and money.
It includes how to dump the computer codes quickly and simply as one of the first steps. I continue to update it as more people post fixes or ask questions. You can post questions to that sticky and have your name and idle problem recognized. The guys with original problems and fixes get their posts added to the main fix.
It's free, I don't get anything for the use of it except knowing I helped a fellow Mustang enthusiast with his car. At last check, it had more than 250,000 hits, which indicates it does help fix idle problems quickly and inexpensively.