Easiest way to tell is to get a look at the casting number on the head. It's right above the exhaust manifold, in the front of the engine on the right head, and the rear of the engine on the left head. It's going to be hard to see it, you'll probably have to get a mirror on a stick or something. There are 2 PI castings, Windsors have the individual cam caps like pictured above and Romeo PI's have the big bridge style one, so that's really not a good way to tell, just looking at the cam caps through the oil fill hole. Ford used Windsor PI's in the '99 and '00 GT's due to a fire at the Romeo Plant. They resumed using Romeo motors in '01 in the Mustangs.
Stock PI cars have the oil filler tube on the RH side, but if it's a headswap he could have used the original valve covers, so that's not good either.
Only real way to tell is to look at those casting numbers or remove the intake and look at the port shape, or take it to the strip and see.
PI Romeo Casting number RF1L2E-6090-D24D
Windsors have something like: XL3E-60690-D24D
Having a pony on the upper intake elbow is no indicator, mine has one also.