When you say "all my emissions stuff is still there", I assume that doesn't include the original H pipe and its catalytic converters if you've got LTs. The lack of a MIL and presence of the P1000 indicates that the PCM isn't doing all the checks (for instance, the rear O2s may be "turned off") and so you may have issues and not know it.
If they put the car on a rolling road and stick a sniffer up the tailpipe, I'd expect you'll come close with those cams, LTs and whatever cats your have. My car failed a sniffer test with cams and an MRT catted H on stock manifolds and it actually it failed quite badly. When I put the OE H-pipe back on it was nearly indistinguishable from a bone stock sniffer test. That's how good OE cats are and how bad some "high flow" aftermarket cats can be.
If they put the car on a rolling road and stick a sniffer up the tailpipe, I'd expect you'll come close with those cams, LTs and whatever cats your have. My car failed a sniffer test with cams and an MRT catted H on stock manifolds and it actually it failed quite badly. When I put the OE H-pipe back on it was nearly indistinguishable from a bone stock sniffer test. That's how good OE cats are and how bad some "high flow" aftermarket cats can be.
Hook up a scanner and see if you can tell which test is not completing. The tuner may have disabled something which is required - downstream O2s, EGR, etc.
I'm pretty sure you won't pass inspection if the drive cycle test aren't all completing and passing.
Here's the procedure from Ford for completing a OBDII drive cycle
I'm pretty sure you won't pass inspection if the drive cycle test aren't all completing and passing.
Here's the procedure from Ford for completing a OBDII drive cycle