hmm, I'm about to go from manual 4 wheel drum to manual Baer disc/drum. Bill at Street or Track said the manual pedal would be just fine with the Baer master cylinder.
My understanding is that it's not the pressure, it's the volume - discs need more volume, i.e. a larger bore. That might make sense that since you didn't change the m/c, it's not giving you the volume you need.
at least I think that's how it works. <prepares to put foot in mouth>
Are the brakes working fine w/o much pedal travel? What's the problem, then?