That rough idle or lumpy idle is due to valve overlap. Valve overlap is when both then intake and exhaust valves are open, which allows your engine to breath at the higher RPM range. When the exhaust is forced out by the piston it creates a vacuum, which will help drawn in more air/fuel. The downsides is that not only do you have less vacuum available at idle like SD said, but you also will have horriable gas mileage(at idle the gas is pretty much getting blown right out the exhaust port, starving the engine, hence the rough idle) plus a slower throttle responce off idle.
-Shaun