A/F and timing at idle, cold start, part throttle and WOT. Idle speed, rev limiter, 02 transport delay, EGR, thermactor pump, part throttle and WOT shift points, auto trans gear ratio and converter lock. Adaptive learning, chroniometric items, coasting fuel shut off, dashpot, fan control, fuel injector, MAF curve, MAF voltage limits, ISC functions, BP values, open/closed loop control, crank fuel and a bunch of other things - and for each of the items I mentioned there are a TON of prameters to adjust. Modern ECUs (even not so modern like '95's) are really sophisticated.