Hey, I had an interesting problem with my first car. I had a Laser Red 94 GT that I am so sorry I ever got rid off (whoops, I was to have surpressed my anger awhile ago) Anyway, with 10,000 miles on it, it made a squeaking noise as I would drive it. If I applied just the slightest amount of pressure on the clutch pedal, it went away. So I take it to Ford and they replace the throw out bearing. 3K miles later, same thing. I go back, they replace the throw out bearing. Well, 3K miles again, same !@#$'ing squeak! I take it back, and this time, they tell me there is a "note" on this problem and the pressure plates of "some" 94's had a bent finger causing premature wear on the throwout bearing. They replaced the plate and bearing and all was well through 132K when I retardedly got rid of my show-room looking 94GT (whoops, there I go again!)
Good luck!