41/91 are lean codes. You temporarily richened the mixture by increasing FP with the old injector pulsewidth. Once the puter realizes what is going on (assuming O2's actually work) it will adapt the pulsewidth down (so you are still squirting the same amount of fuel as before the FP change) and the codes will probably pop back up (they might not, but it is likely).
12 is probably IAC related. Not sure why that changed.
Good luck.