First thing, what grit paper are you sanding with? The pits are called pinholes. When you mix in the cream harder into the filler don't whip it in, fold it over itself, this will lessen the chance of pin holes.
If your getting tracks it's because you are not sanding correctly. Let the paper do the cutting don't apply alot of pressure and make sure you are leaving enough to fill the low areas. I can tell by the pictures that you have sanded enough of the filler away in some areas and are getting into the fiberglass. Knock down all of your high spots then try putting one smooth even coat of filler on let it setup then get some 80 grit and start lightly sanding on it. That should work better.