Junk the car.

Or, MORE INFO! It could be a ton of things. Without more info, you WILL end up junking the whole exhaust setup.
You need NEW O2 sensors, you need 3 way cats, you need the cats and o2 sensors to be hot enough, you must go into closed loop. Or, you need a good working EGR system. You need to have your timing right. And so on and so on. So, you can junk the car. Or, list (in a nice way) every thing about the test, the results, the standard, your car, the setup, etc.
Still, my guess is that there is very little chance you'll pass, in anyway, with your setup. Non coated long tubes are horrible for smog. They let out too much heat. The cats are too far down. Etc.
The superchip _should_ effect only WOT conditions. Unless, you have a custom *non smog legal* tune.
In short, you may have to put on the stock headers and h-pipe to pass. YOUR engine and the way it's tested in NOT the same as "joe blow" that passed with a million mods. Also, you'll NEED the smog pump working.
Can a stang pass with long tubes and no cats? Well, some people have. IMHO, they should have bought a lottery ticket with that type of luck.
BTW: Some states are now checking for the *number* of cats. More and more are. So, keep that in mind. A state can change smog testing procedures *anytime* they feel like it. An aftermarket h-x pipe is NOT smog legal. Never has been, never will be. But, it MAY pass SOME smog tests.
BTW#2: *I* did not make the laws, or create the laws of physics. So, don't complain to me.

*I*, and many other, have to deal with the same thing.