Get a set of checker springs to hold the valves closed and snug the heads down onto the block with a correct thickness shim to make up for the head gasket. Put the valve train on #1 chamber and roll the motor over a little at a time and push the valves down until they touch the piston. Just go slow and make sure you don't bind the valve into the piston as you go.
Just remember, 1/8" is .125 so make sure you have at least that much clearance. Once you are done, take the heads to a shop so they can set the spring pressure up where the cam specifies so you won't float the valves at speed and smack the pistons.
Jamie