Do you have the HF mufflers or the glasspacks?
Any ideas on where you think the rattle may be comming from?
Does is rattle all the time or just over bumps?
If you have the High Flow mufflers, are the intake and output centered or offset from each other? Sometimes (been know to happen) with the offset hi flow mufflers, they are installed on the wrong sides (driver/passenger) and won't get the proper clearance.
Another suspect place is where the tubing bends up and over the rear axle. Sometimes the tubing will hit the rear suspension or axle.