swap 04 PI crate engine into 97 GT

[97-Blk_GT]

I recently bought a 97 GT/auto with a bad motor..(not sure what is wrong with it)...it has been sitting for 3 yrs...so I ordered a 04 PI crate stock crate motor...is there anyone or a website that will tell me what will have to be changed out to make the swap easier..like I know the thermo housing needs to be swapped out, cuz the new one will put the hose right in sight of where my old coil pack need to go..and a few other small things..Im new to the mustang scene and would like to get the upper hand when I do the swap..thanks for any help...