The trans depends on how much you've got to spend. A T5 is [obviously] a direct swap and will take a good beating. You could go with the "close(r) ratio" T5 - the T5Z. I'm not sure on prices, but I think you'd have to change the input and output shafts, as they are made for Fox-body cars. I would call either Bob Hanlon or D&D Performance. You will find them most helpful if you decide to go with a T5.
As for the rear - go with 4.10's and nitrous. On a 26" tire, you'll be able to trap 115-ish on the limiter. Once you go past those speeds, get a taller tire or cut back on the gearing depending on your plans.
Joe