Where do these lines go?

Have a wire harness coming from what I believe is referred to as the TAB and TAD located on the passenger side behind strut tower. This harness plugs into another harness that has vaccum lines. It appears that mine should have 5 lines from this harness. Mine actually has only two full lines, one line thats been cut at about an inch, and two empty holes in the rubber where some should be.

One full line runs to the canister that the EGR is plugged into, one runs over to the underside of the cobra intake just above the rear of the drivers valve cover. Where should the other three go?

On the front side of the intake just behind the TB there is a threaded port that has a cap on it. Should one go there? Where should that lead to?

I understand they may not be needed due to a different than factory intake, as well mine does not have a smog pump on it. I would like to run them to where they need to go if you guys have a clue.

Thanks for all your help through my recon/deconstruction.

Also, off of the wring harness that my MAF is run through there are two group of wires individually factory wrapped. Both of them end with a plug in port and both of them are plugged into a block. The block just basically caps them off and has no wires to them at all. These two just hang around by my fenderwell where the air intake enters. Any clue what these are?

After asking this and doing a little more research I have almost put together what you said. Basically those vaccum lines that arent hooked up just arent needed. As for those relays, I wasn't planning on ditching them, just curious what they were for. I appreciate you guys help.