Bad signal ground for the sensors...Has nothing to do with the alternator change. you have a broken wire or bad connection somewhere.
What year is your car? The wiring changed several times between 86 and 95, and I need to know so I can put up the correct tech note to match your wiring.
Code 22 or 126 MAP (vacuum) or BARO signal out of range.
On a Mass Air car, the MAP sensor vents to open air and actually acts to sense the barometric pressure. It becomes a Barometric Air pressure sensor. It's purpose is to set a baseline for the computer to know the height above sea level. The fuel requirements decrease as altitude increases, since the atmospheric pressure decreases. As altitude increases, it leans out the fuel flow to compensate for less oxygen in the air.
Disconnecting the MAP or BARO sensor will set code 22.
Misconnecting the BARO sensor to vacuum on a Mass Air car will cause the computer to lean out the fuel mixture.
The MAP or BARO sensor is pretty much the same sensor for both Mass Air & Speed Density cars. The main difference is where it is connected. Mass Air cars vent it to the atmosphere, while Speed Density cars connect it to the intake manifold vacuum. Its purpose is to help set a baseline for the air/fuel mixture by sensing changes in barometric pressure. The MAP or BAP sensor puts out a 5 volt square wave that changes frequency with variations in atmospheric pressure. The base is 154 HZ at 29.92" of mercury - dry sunny day at sea level, about 68-72 degrees. You need an oscilloscope or frequency meter to measure it. There a very few DVM with a price tag under $40 that will measure frequency, but there are some out there.
The MAP/BARO sensor is mounted on the firewall behind the upper manifold on 86-93 Mustangs.
Baro or MAP test using frequency meter - run the test key on engine off. The noise from the ignition system will likely upset the frequency meter. I used a 10 x oscilloscope probe connected from the frequency meter to the MAP/BAP to reduce the jitter in the meter's readout.
If it is defective, your air/fuel ratio will be off and the car’s performance & emissions will suffer
Some basic checks you can make to be sure that the sensor is getting power & ground:
Note that all resistance tests must be done with power off. Measuring resistance with a circuit powered on will give false readings and possibly damage the meter.
Check the resistance between the black/white wire on the MAP/BARO sensor and then the black/white wire on the EGR and the same wire on the TPS. It should be less than 1 ohm. Next check the resistance between the black/white wire and the negative battery cable. It should be less than 1.5 ohm.
The following power on check requires you to turn the ignition switch to the Run position.
Use a DVM to check for 5 volts on the orange/white wire. If it is missing, look for +5 volts at the orange/white wire on the TPS or EGR sensors. Use the black/white wire for the ground for the DVM.
Code 35 EVR - EVP sensor signal is/was high – Bad sensor, or possible missing ground for EVR circuit. With the power off, measure the resistance between the black/white wire and battery ground. You should see less than 1 ohm. Check the same black /white wire on the TPS and MAP sensor. More than 1 ohm there and the wire is probably broken in the harness between the engine and the computer. The 10 pin connectors pass the black/white wire back to the computer, and can cause problems.
See the following website for some help from Tmoss (diagram designer) & Stang&2Birds (website host)
http://www.veryuseful.com/mustang/tech/engine/images/88-91eecPinout.gif
See
Ford Fuel Injection » Wiring Harnesses for more wiring help & 10 pin connector diagrams
Code 51 Engine Coolant Temperature (ECT) sensor signal is/was too high -
Possible bad ECT sensor, or wiring. Possible missing signal ground –
black/wire wire broken or bad connection. With the power off, measure the
resistance between the black/white wire and battery ground. You should see
less than 1 ohm. Check the same black /white wire on the TPS and MAP
sensor. More than 1 ohm there and the wire is probably broken in the harness
between the engine and the computer. The 10 pin connectors pass the
black/white wire back to the computer, and can cause problems.
Pin 7 on the computer - ECT signal in. at 176 degrees F it should be .80 volts
Voltages may be measured across the ECT by probing the connector from the rear.
Use care in doing it so that you don't damage the wiring or connector.
50 degrees F = 3.52 v
68 degrees F = 3.02 v
86 degrees F = 2.62 v
104 degrees F = 2.16 v
122 degrees F = 1.72 v
140 degrees F = 1.35 v
158 degrees F = 1.04 v
176 degrees F = .80 v
194 degrees F = .61
212 degrees F = .47 v
230 degrees F = .36 v
248 degrees F = .28 v
Ohms measures at the computer with the computer disconnected, or at the sensor with the sensor disconnected.
50 degrees F = 58.75 K ohms
68 degrees F = 37.30 K ohms
86 degrees F = 27.27 K ohms
104 degrees F = 16.15 K ohms
122 degrees F = 10.97 K ohms
140 degrees F = 7.60 K ohms
158 degrees F = 5.37 K ohms
176 degrees F = 3.84 K ohms
194 degrees F = 2.80 K ohms
212 degrees F = 2.07 K ohms
230 degrees F = 1.55 K ohms
248 degrees F = 1.18 k ohms
Diagram courtesy of Tmoss & Stang&2birds
See the following website for some help from Tmoss (diagram designer) & Stang&2Birds (website host) for help on 88-95 wiring
Mustang FAQ - Wiring & Engine Info
http://www.veryuseful.com/mustang/tech/engine/images/IgnitionSwitchWiring.gif
http://www.veryuseful.com/mustang/tech/engine/images/fuel-alt-links-ign-ac.gif
http://www.veryuseful.com/mustang/tech/engine/images/88-91_5.0_EEC_Wiring_Diagram.gif
Code 53 - Throttle Position sensor too high – TPS – TPS out of adjustment, bad connections, missing signal ground, bad sensor.
Wire colors & functions:
Orange/white = 5 volt VREF from the computer
Dark Green/lt green = TPS output to computer
Black/white = Signal ground from computer
Always use the Dark green/lt green & Black/white wires to set the TPS base voltage.
Do the test with the ignition switch in the Run position without the engine running.
Use the Orange/white & Black white wires to verify the TPS has the correct 5 volts source from the computer.
Setting the TPS: you'll need a good Digital Voltmeter (DVM) to do the job. Set the TPS voltage at .5- 1.1 range. Because of the variables involved with the tolerances of both computer and DVM, I would shoot for somewhere between .6 and 1.0 volts. Unless you have a Fluke or other high grade DVM, the second digit past the decimal point on cheap DVM’s is probably fantasy. Since the computer zeros out the TPS voltage every time it powers up, playing with the settings isn't an effective aid to performance or drivability. The main purpose of checking the TPS is to make sure it isn't way out of range and causing problems.
The Orange/White wire is the VREF 5 volts from the computer. You use the Dark Green/Lt green wire (TPS signal) and the Black/White wire (TPS ground) to set the TPS. Use a pair of safety pins to probe the TPS connector from the rear of the connector. You may find it a little difficult to make a good connection, but keep trying. Put the safety pins in the Dark Green/Lt green wire and Black/White wire. Make sure the ignition switch is in the Run position but the engine isn't running.
Here’s a TPS tip I got from NoGo50
When you installed the sensor make sure you place it on the peg right and then tighten it down properly. Loosen the back screw a tiny bit so the sensor can pivot and loosen the front screw enough so you can move it just a little in very small increments. I wouldn’t try to adjust it using marks.
(copied from MustangMax, Glendale AZ)
A.) Always adjust the TPS and Idle with the engine at operating temp. Dive it around for a bit if you can and get it nice and warm.
B.) When you probe the leads of the TPS, do not use an engine ground, put the ground probe into the lead of the TPS. You should be connecting both meter probes to the TPS and not one to the TPS and the other to ground.
C.) Always reset the computer whenever you adjust the TPS or clean/change any sensors. I just pull the battery lead for 10 minutes.
D.) The key is to adjust the TPS voltage and reset the computer whenever the idle screw is changed.
The TPS is a variable resistor, must like the volume control knob on a cheap radio. We have all heard them crackle and pop when the volume is adjusted. The TPS sensor has the same problem: wear on the resistor element makes places that create electrical noise. This electrical noise confuses the computer, because it expects to see a smooth increase or decrease as the throttle is opened or closed.
TPS testing: most of the time a failed TPS will set code 23 or 63, but not always. Use either an analog meter or a DVM with an analog bar graph and connect the leads as instructed above. Turn the ignition switch to the Run position, but do not start the engine. Note the voltage with the throttle closed. Slowly open the throttle and watch the voltage increase smoothly, slowly close the throttle and watch the voltage decrease smoothly. If the voltage jumps around and isn’t smooth, the TPS has some worn places in the resistor element. When the throttle is closed, make sure that the voltage is the same as what it was when you started. If it varies more than 10%, the TPS is suspect of being worn in the idle range of its travel.
Adjusting the TPS fails to resolve the problem:
Check the black/white wire resistance. Connect one ohmmeter lead to the black/white wire on the TPS and one lead to the negative post on the battery. You should see less than 1.5 ohm, more than that indicates a problem.
Always take resistance measurements with the circuit powered off.
Clean the 10 pin salt & pepper shaker connectors.
.
See
Ford Fuel Injection » 10-pin Connector Fix for more help
Code 54 – ACT sensor out of range. Broken or damaged wiring, bad ACT sensor. Note that that if the outside air temp is below 50 degrees F that the test for the ACT can be in error.
Check the resistance of the black/white wire to battery ground. If it is less than 2 ohms, it is good. If it is more than 2 ohms, the black/white wire has bad connections or a broken wire. Always take resistance measurements with the circuit powered off.
Then check the resistance of the ACT sender located in the #5 intake runner on most 5.0 stangs.
ACT & ECT test data:
The ACT & ECT have the same thermistor, so the table values are the same
Pin 7 on the computer - ECT signal in. at 176 degrees F it should be .80 volts
Pin 25 on the computer - ACT signal in. at 50 degrees F it should be 3.5 volts. It is a good number if the ACT is mounted in the inlet airbox. If it is mounted in the lower intake manifold, the voltage readings will be lower because of the heat transfer. Here's the table :
68 degrees F = 3.02 v
86 degrees F = 2.62 v
104 degrees F = 2.16 v
122 degrees F = 1.72 v
140 degrees F = 1.35 v
158 degrees F = 1.04 v
176 degrees F = .80 v
194 degrees F = .61
Ohms measures at the computer with the computer disconnected, or at the sensor with the sensor disconnected.
50 degrees F = 58.75 K ohms
68 degrees F = 37.30 K ohms
86 degrees F = 27.27 K ohms
104 degrees F = 16.15 K ohms
122 degrees F = 10.97 K ohms
140 degrees F = 7.60 K ohms
158 degrees F = 5.37 K ohms
176 degrees F = 3.84 K ohms
194 degrees F = 2.80 K ohms