mid pipe bolts stuck, help!!

When you say "stuck" do you mean stripped or too hard to turn?
I'd start by hitting them up with some PB blaster a few times and letting it sit.
 
Get some penetrating(sp) oil, spray it down, wait a few hours, maybe a day, and turn the wrench. That is if they're stuck as in not moving.

If they're stripped, you can drill them or you can use a punch and make it into a flathead screw, and try that.
 
Spray the PB blaster i suggest on there. I've literally watched how it eats and washes rust off.

On my work van i had to change the header gasket and all the bolt s were stuck, I sprayed them a few times with a few hours between, and all the rust came off and stained the driveway.

On the other hand, why do you want to get the studs out if you got the nuts off already?
 
You can do your best to save the threads, but i wouldn't count on it.
If you do minimal damage to the threads, the right size tap may clean them right up.