No problem man, I'm excited for you to get that baby installed and start digging in
I used the factory harness with mine and added a relay near the computer to make the fan output ground coming from the ECU stronger and wired it to my 2 fan relays.
I would imagine your standalone harness with the fan relay built in will already be set up to be triggered by the ECU fan output (that seems like the whole point right? haha) so you should just have to see if the fan relay puts out positive or negative and wire your fan relays accordingly.
If you do decide to go the Mark VIII route, I took a bunch of pictures of how I did the mounting and whatnot in mine and could shoot them over to you.