ok guys im new here and this is the first mustang ive owned.. its a 95 gt. i am have n trouble with it running right. it surges until it warms up . it seems to have a mis fire. the motor was just rebuilt last week. put it in the car got it running and now im have n these problems. all the plugs cap rotor and coil have been replaced. people are telling me that i need to change the computer to a 93 5speed computer . they said 95 is the worst year for computer problems. oh the car was a 5 speed and now auto. also have a trickflow intake and a stage 2 trickflow cam. has stock injectors 75mm throttle body and thats all i can think of to help now.. just not sure what to do .. please help.. thank you

it wont let me post pic. but i found out from the guy i bought the car from it had a pro charger on it before i bought it and they put it back together some what stock. so here lies my problems i think.. the cold air they used on the car has no hole in it for that sensor. thats why i think that wire is just hanging there.. im going to have a buddy help me with the obd codes because im un sure that im doing it right.. the fire n order is set 13726548 like the book calls for... also i had to have a fresh rebuild because i found out after i bought the car it had 5 broken pistions. they were broke between the rings... i called ford and they told me that the comp is for a 95 but couldnt tell me stick or auto.. the car was a stick and now has an auto.. and to think i sold my 8 second hayabusa to build a car.. i thought that thing was a pain .. boy was i wrong..lol.. i also have the timing set at 14 and yes i pulled the spout.. this thing is driving me nuts.. wish i knew more about these cars before i bought one.. i could tell u anything u need to know about a hayabusa but mustang im lost..
Sounds like you got an auto trans working in a Stang that has a stick trans pcm 

but it sounds like you're getting somewhere. I had a funny feeling about the timing. I usually set it to run with no timing light before dialing it in. I can get it within a few degrees from optimal without using the light based on the sound/feel of the idle.