Well - if you have the fan set at the same temp as the t'stat, it's gonna run all the time ---- kind'a makes one wonder why you bothered with a controller....
The fan temp should be set 5F-10F ABOVE the t'stat temp so that when you're under cruise and enough air is moving across the rad to cool the car, the fan will be off. And without some solid temperature data from a real gauge, it's pretty impossible to know what's going on.
About the only thing you can check is operation of the fan -- with it set at the same temp as the t'stat - once the t'stat opens, the fan should be on all the time. If that's not happening, then something's either wrong or at least inaccurate with the controller. And even that assumes the t'stat is operating like it should. Have you checked the operation of the t'stat with a thermometer and a pan of boiling coolant on the stove?
How does the controller work? Where/how does it sense temperature? When you're under cruise for an extended period of time, does the temp come down?